Design and analysis of high performance matrix filling for DNA sequence alignment accelerator using ASIC design flow / Nurzaima Mahmod

This report presents the design and analysis high performance matrix filling for DNA sequence alignment accelerator using ASIC design flow. The objective of this paper is to design and analysis matrix module of DNA sequence alignment accelerator using clock cycle to get high performance. The scope o...

Full description

Saved in:

Bibliographic Details
Main Author:	Mahmod, Nurzaima
Format:	Thesis
Language:	English
Published:	2010
Online Access:	https://ir.uitm.edu.my/id/eprint/102655/1/102655.pdf
Tags:	Add Tag No Tags, Be the first to tag this record!

id	my-uitm-ir.102655
record_format	uketd_dc
spelling	my-uitm-ir.1026552024-09-30T08:00:47Z Design and analysis of high performance matrix filling for DNA sequence alignment accelerator using ASIC design flow / Nurzaima Mahmod 2010 Mahmod, Nurzaima This report presents the design and analysis high performance matrix filling for DNA sequence alignment accelerator using ASIC design flow. The objective of this paper is to design and analysis matrix module of DNA sequence alignment accelerator using clock cycle to get high performance. The scope of this paper is to optimize the DNA sequences alignment on the matrix filling module by implementing a parallel method of the SmithWaterman algorithm. This method provides magnificent speed up over than traditional sequential implementation methods while it sensitivity detection is still remained. To optimize the performance of the algorithm by exploiting parallelism in the design several techniques have been developed. In the advanced engineering technology, the massive parallelism can be implemented by using the Field Programmable Logic Array (FPGA) techniques. The design was developed in Verilog HDL coding and synthesis by using LINUX tools. From the LINUX tools, the optimum combination of parameters is manipulated to produce the most energy efficient IC. The design produces an ASIC that can work at 5ns until 10ns clock period and range of ICC time between 0.63ns until 1.67ns. The area of this design is 10304.358um 2 . 2010 Thesis https://ir.uitm.edu.my/id/eprint/102655/ https://ir.uitm.edu.my/id/eprint/102655/1/102655.pdf text en public degree Universiti Teknologi MARA Faculty of Electrical Engineering
institution	Universiti Teknologi MARA
collection	UiTM Institutional Repository
language	English
description	This report presents the design and analysis high performance matrix filling for DNA sequence alignment accelerator using ASIC design flow. The objective of this paper is to design and analysis matrix module of DNA sequence alignment accelerator using clock cycle to get high performance. The scope of this paper is to optimize the DNA sequences alignment on the matrix filling module by implementing a parallel method of the SmithWaterman algorithm. This method provides magnificent speed up over than traditional sequential implementation methods while it sensitivity detection is still remained. To optimize the performance of the algorithm by exploiting parallelism in the design several techniques have been developed. In the advanced engineering technology, the massive parallelism can be implemented by using the Field Programmable Logic Array (FPGA) techniques. The design was developed in Verilog HDL coding and synthesis by using LINUX tools. From the LINUX tools, the optimum combination of parameters is manipulated to produce the most energy efficient IC. The design produces an ASIC that can work at 5ns until 10ns clock period and range of ICC time between 0.63ns until 1.67ns. The area of this design is 10304.358um 2 .
format	Thesis
qualification_level	Bachelor degree
author	Mahmod, Nurzaima
spellingShingle	Mahmod, Nurzaima Design and analysis of high performance matrix filling for DNA sequence alignment accelerator using ASIC design flow / Nurzaima Mahmod
author_facet	Mahmod, Nurzaima
author_sort	Mahmod, Nurzaima
title	Design and analysis of high performance matrix filling for DNA sequence alignment accelerator using ASIC design flow / Nurzaima Mahmod
title_short	Design and analysis of high performance matrix filling for DNA sequence alignment accelerator using ASIC design flow / Nurzaima Mahmod
title_full	Design and analysis of high performance matrix filling for DNA sequence alignment accelerator using ASIC design flow / Nurzaima Mahmod
title_fullStr	Design and analysis of high performance matrix filling for DNA sequence alignment accelerator using ASIC design flow / Nurzaima Mahmod
title_full_unstemmed	Design and analysis of high performance matrix filling for DNA sequence alignment accelerator using ASIC design flow / Nurzaima Mahmod
title_sort	design and analysis of high performance matrix filling for dna sequence alignment accelerator using asic design flow / nurzaima mahmod
granting_institution	Universiti Teknologi MARA
granting_department	Faculty of Electrical Engineering
publishDate	2010
url	https://ir.uitm.edu.my/id/eprint/102655/1/102655.pdf
_version_	1811769229897105408

Design and analysis of high performance matrix filling for DNA sequence alignment accelerator using ASIC design flow / Nurzaima Mahmod

Similar Items