Molecular characterization of coagulase-negative staphylococcus and biofilmassociated genes in S. Capitis / Aziyah Abdul Aziz

The coagulase-negative Staphylococcus (CoNS) is a group of bacteria that are gaining prominence as emerging pathogens of hospital-acquired infections. One such species is S. capitis, which is now the major cause of bloodstream infection especially in neonatal intensive units. The major virulence fac...

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Main Author:	Abdul Aziz, Aziyah
Format:	Thesis
Language:	English
Published:	2015
Subjects:	Bacteria
Online Access:	https://ir.uitm.edu.my/id/eprint/15925/1/TP_AZIYAH%20ABDUL%20AZIZ%20AS%2015_5.PDF
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spelling	my-uitm-ir.159252022-03-10T02:09:02Z Molecular characterization of coagulase-negative staphylococcus and biofilmassociated genes in S. Capitis / Aziyah Abdul Aziz 2015 Abdul Aziz, Aziyah Bacteria The coagulase-negative Staphylococcus (CoNS) is a group of bacteria that are gaining prominence as emerging pathogens of hospital-acquired infections. One such species is S. capitis, which is now the major cause of bloodstream infection especially in neonatal intensive units. The major virulence factor of S. capitis appears to be its ability to form a biofilm structure. A total of 200 local clinical isolates of CoNS was obtained from the Hospital Tuanku Ampuan Rahimah, Klang in between December 2010 to May 2011.Nine species of CoNS were identified with S. epidermidis, S. haemolyticus, S. hominis and S. capitis being the most prevalent strains. Identification of the isolates by biochemical tests using the Microgen Staph ID kit was less than 50% accurate while identification via the sodA gene sequence provided better discrimination and accuracy.The ERIC-PCR fingerprinting was then used to genotype the CoNS strains and the Discriminative Index (D) was calculated. At D = 0.949, ERIC-PCR can be used with confidence to discriminate between the S. hominis strains. However, low discriminative power (D < 0.9) was observed for S. capitis, S. epidermidis and S. haemolyticus implying that ERIC-PCR fingerprinting is not sufficient to genotype these strains. A multiplex PCR method was successfully developed to probe for the presence of icaABCD operon in a majority of the bacterial strains. At 88%, S. capitis showed the highest ability to form biofilm with a large percentage of-these forming dense biofilm structures while the icaABCD operon was found to be present in all of the strains. Biofilm formation was however less frequent in other species, e.g. 39.2% in S. epidermidis, 16.7% in S. hominis and 3.3% in S. haemolyticus. Antimicrobial susceptibility test showed that for S. capitis, the formation of biofilm significantly increased the resistance of the biofilm cells to six types of antibiotics, similar to that reported for S. epidermidis. However, except for the case of ciprofloxacin, the thickness of biofilm did not appear to have any effect on the antibiotic resistance of the cells. Strain S. capitis B102 was selected for screening of novel biofilm-associated genes due to its ability to consistently form a very thick biofilm. Attempts to generate biofilm-defective mutants by transposon-mediated mutagenesis using the bursa aurealis system was however unsuccessful. Comparative genomics of B102 and three other S. capitis strains P27 (a non-biofilm former), B63 (moderate biofilm) and B145 (very strong biofilm) revealed that the S. capitis genome was dynamically shaped by horizontal gene transfer (HGT) via prophages, Staphylococcal Chromosome Cassettes (SCC) and plasmids. Some mobile genetic elements (MGE) present only in B102 and B145 are found to carry genes implicated in biofilm formation e.g. the Atl autolysin. By comparing the SNP profiles in strains with different biofilm phenotype, a list of seven candidate biofilm-associated genes was obtained. The ability of S. capitis to acquire additional genetic elements via HGT, and its propensity to form robust biofilm which enhances its antibiotic resistance, points to the possibility of this organism evolving into a significant pathogen. 2015 Thesis https://ir.uitm.edu.my/id/eprint/15925/ https://ir.uitm.edu.my/id/eprint/15925/1/TP_AZIYAH%20ABDUL%20AZIZ%20AS%2015_5.PDF text en public phd doctoral Universiti Teknologi MARA Faculty Applied Sciences
institution	Universiti Teknologi MARA
collection	UiTM Institutional Repository
language	English
topic	Bacteria
spellingShingle	Bacteria Abdul Aziz, Aziyah Molecular characterization of coagulase-negative staphylococcus and biofilmassociated genes in S. Capitis / Aziyah Abdul Aziz
description	The coagulase-negative Staphylococcus (CoNS) is a group of bacteria that are gaining prominence as emerging pathogens of hospital-acquired infections. One such species is S. capitis, which is now the major cause of bloodstream infection especially in neonatal intensive units. The major virulence factor of S. capitis appears to be its ability to form a biofilm structure. A total of 200 local clinical isolates of CoNS was obtained from the Hospital Tuanku Ampuan Rahimah, Klang in between December 2010 to May 2011.Nine species of CoNS were identified with S. epidermidis, S. haemolyticus, S. hominis and S. capitis being the most prevalent strains. Identification of the isolates by biochemical tests using the Microgen Staph ID kit was less than 50% accurate while identification via the sodA gene sequence provided better discrimination and accuracy.The ERIC-PCR fingerprinting was then used to genotype the CoNS strains and the Discriminative Index (D) was calculated. At D = 0.949, ERIC-PCR can be used with confidence to discriminate between the S. hominis strains. However, low discriminative power (D < 0.9) was observed for S. capitis, S. epidermidis and S. haemolyticus implying that ERIC-PCR fingerprinting is not sufficient to genotype these strains. A multiplex PCR method was successfully developed to probe for the presence of icaABCD operon in a majority of the bacterial strains. At 88%, S. capitis showed the highest ability to form biofilm with a large percentage of-these forming dense biofilm structures while the icaABCD operon was found to be present in all of the strains. Biofilm formation was however less frequent in other species, e.g. 39.2% in S. epidermidis, 16.7% in S. hominis and 3.3% in S. haemolyticus. Antimicrobial susceptibility test showed that for S. capitis, the formation of biofilm significantly increased the resistance of the biofilm cells to six types of antibiotics, similar to that reported for S. epidermidis. However, except for the case of ciprofloxacin, the thickness of biofilm did not appear to have any effect on the antibiotic resistance of the cells. Strain S. capitis B102 was selected for screening of novel biofilm-associated genes due to its ability to consistently form a very thick biofilm. Attempts to generate biofilm-defective mutants by transposon-mediated mutagenesis using the bursa aurealis system was however unsuccessful. Comparative genomics of B102 and three other S. capitis strains P27 (a non-biofilm former), B63 (moderate biofilm) and B145 (very strong biofilm) revealed that the S. capitis genome was dynamically shaped by horizontal gene transfer (HGT) via prophages, Staphylococcal Chromosome Cassettes (SCC) and plasmids. Some mobile genetic elements (MGE) present only in B102 and B145 are found to carry genes implicated in biofilm formation e.g. the Atl autolysin. By comparing the SNP profiles in strains with different biofilm phenotype, a list of seven candidate biofilm-associated genes was obtained. The ability of S. capitis to acquire additional genetic elements via HGT, and its propensity to form robust biofilm which enhances its antibiotic resistance, points to the possibility of this organism evolving into a significant pathogen.
format	Thesis
qualification_name	Doctor of Philosophy (PhD.)
qualification_level	Doctorate
author	Abdul Aziz, Aziyah
author_facet	Abdul Aziz, Aziyah
author_sort	Abdul Aziz, Aziyah
title	Molecular characterization of coagulase-negative staphylococcus and biofilmassociated genes in S. Capitis / Aziyah Abdul Aziz
title_short	Molecular characterization of coagulase-negative staphylococcus and biofilmassociated genes in S. Capitis / Aziyah Abdul Aziz
title_full	Molecular characterization of coagulase-negative staphylococcus and biofilmassociated genes in S. Capitis / Aziyah Abdul Aziz
title_fullStr	Molecular characterization of coagulase-negative staphylococcus and biofilmassociated genes in S. Capitis / Aziyah Abdul Aziz
title_full_unstemmed	Molecular characterization of coagulase-negative staphylococcus and biofilmassociated genes in S. Capitis / Aziyah Abdul Aziz
title_sort	molecular characterization of coagulase-negative staphylococcus and biofilmassociated genes in s. capitis / aziyah abdul aziz
granting_institution	Universiti Teknologi MARA
granting_department	Faculty Applied Sciences
publishDate	2015
url	https://ir.uitm.edu.my/id/eprint/15925/1/TP_AZIYAH%20ABDUL%20AZIZ%20AS%2015_5.PDF
_version_	1783733468120743936

Molecular characterization of coagulase-negative staphylococcus and biofilmassociated genes in S. Capitis / Aziyah Abdul Aziz

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