Terahertz sensing analysis for early detection of ganoderma boninense disease using near infrared (NIR) spectrometer

Ganoderma boninense (G. boninense) infection reduces the productivity of oil palms and causes a significant impact on the economic viability of oil palm plantations. Early detection is critical for the effective management of this disease since there is no effective treatment that can stop the sprea...

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Main Author:	Mas Ira Syafila, Mohd Hilmi Tan
Format:	Thesis
Language:	English
Published:	2023
Subjects:	T Technology (General)
Online Access:	http://umpir.ump.edu.my/id/eprint/38493/1/ir.Terahertz%20sensing%20analysis%20for%20early%20detection%20of%20ganoderma%20boninense%20disease%20using%20near%20infrared%20%28NIR%29%20spectrometer.pdf
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spelling	my-ump-ir.384932023-08-25T02:19:24Z Terahertz sensing analysis for early detection of ganoderma boninense disease using near infrared (NIR) spectrometer 2023-06 Mas Ira Syafila, Mohd Hilmi Tan T Technology (General) TK Electrical engineering. Electronics Nuclear engineering Ganoderma boninense (G. boninense) infection reduces the productivity of oil palms and causes a significant impact on the economic viability of oil palm plantations. Early detection is critical for the effective management of this disease since there is no effective treatment that can stop the spread of this disease. The proposed system uses integrated hand-held near-infrared spectroscopy (NIRS) for early detection of G. boninense on asymptomatic oil palm seedlings and classification of spectral data using machine learning (ML) techniques. The non-destructive method using NIRS with ML and predictive analytics has the potential to be a highly sensitive and reliable method for the early detection of G. boninense. Spectral data are collected from 6 samples of inoculated and non-inoculated oil palm samples at nursery stages using an integrated NIRS sensor. Chemometrics is performed by implementing principal component analysis (PCA), derivatives and partial least square (PLS) regression to extract the vital information of the spectra. The significant wavelengths are at 1310 nm and 1450 nm which are attributable to ergosterol and water content, respectively. Furthermore, the SG derivatives spectra peaks corresponded to specific functional groups that could be utilized for the detection of G. boninense. These functional groups encompass the third overtone of N-H stretching, the second overtone of C-H stretching, and a combination band involving both C-H stretching and O-H stretching. High-performance liquid chromatography (HPLC) analysis is performed to identify the ergosterol content in oil palm sample. Ergosterol can be used as a biomarker for the detection of G. boninense since it can only be found in the fungal-infested plant. In classification, four different ML algorithms: K-Nearest Neighbour (kNN), Naïve Bayes (NB), Support Vector Machine (SVM) and Decision Tree (DT) are tested to classify healthy and infected oil palm samples. DT algorithm on leaves spectra achieves a satisfactory overall performance compared to the other classifiers with high accuracy up to 93.1% and an F1-score of 92.6%. Therefore, a DT-based predictive analytic on leaves NIR spectral reference data is developed for real-time detection of G. boninense infection. A portable smart G. boninense detection system prototype is developed by implementing the Internet of Things (IoT) into the system which enables the integration of sensors and server to perform prediction of healthy or infected oil palm seedlings. This working prototype showed that this proposed approach is reliable and practical for the early detection of G. boninense in oil palm seedlings. 2023-06 Thesis http://umpir.ump.edu.my/id/eprint/38493/ http://umpir.ump.edu.my/id/eprint/38493/1/ir.Terahertz%20sensing%20analysis%20for%20early%20detection%20of%20ganoderma%20boninense%20disease%20using%20near%20infrared%20%28NIR%29%20spectrometer.pdf pdf en public phd doctoral Universiti Malaysia Pahang Faculty of Electrical and Electronic Engineering Technology Mohd Faizal, Jamlos
institution	Universiti Malaysia Pahang Al-Sultan Abdullah
collection	UMPSA Institutional Repository
language	English
advisor	Mohd Faizal, Jamlos
topic	T Technology (General) T Technology (General)
spellingShingle	T Technology (General) T Technology (General) Mas Ira Syafila, Mohd Hilmi Tan Terahertz sensing analysis for early detection of ganoderma boninense disease using near infrared (NIR) spectrometer
description	Ganoderma boninense (G. boninense) infection reduces the productivity of oil palms and causes a significant impact on the economic viability of oil palm plantations. Early detection is critical for the effective management of this disease since there is no effective treatment that can stop the spread of this disease. The proposed system uses integrated hand-held near-infrared spectroscopy (NIRS) for early detection of G. boninense on asymptomatic oil palm seedlings and classification of spectral data using machine learning (ML) techniques. The non-destructive method using NIRS with ML and predictive analytics has the potential to be a highly sensitive and reliable method for the early detection of G. boninense. Spectral data are collected from 6 samples of inoculated and non-inoculated oil palm samples at nursery stages using an integrated NIRS sensor. Chemometrics is performed by implementing principal component analysis (PCA), derivatives and partial least square (PLS) regression to extract the vital information of the spectra. The significant wavelengths are at 1310 nm and 1450 nm which are attributable to ergosterol and water content, respectively. Furthermore, the SG derivatives spectra peaks corresponded to specific functional groups that could be utilized for the detection of G. boninense. These functional groups encompass the third overtone of N-H stretching, the second overtone of C-H stretching, and a combination band involving both C-H stretching and O-H stretching. High-performance liquid chromatography (HPLC) analysis is performed to identify the ergosterol content in oil palm sample. Ergosterol can be used as a biomarker for the detection of G. boninense since it can only be found in the fungal-infested plant. In classification, four different ML algorithms: K-Nearest Neighbour (kNN), Naïve Bayes (NB), Support Vector Machine (SVM) and Decision Tree (DT) are tested to classify healthy and infected oil palm samples. DT algorithm on leaves spectra achieves a satisfactory overall performance compared to the other classifiers with high accuracy up to 93.1% and an F1-score of 92.6%. Therefore, a DT-based predictive analytic on leaves NIR spectral reference data is developed for real-time detection of G. boninense infection. A portable smart G. boninense detection system prototype is developed by implementing the Internet of Things (IoT) into the system which enables the integration of sensors and server to perform prediction of healthy or infected oil palm seedlings. This working prototype showed that this proposed approach is reliable and practical for the early detection of G. boninense in oil palm seedlings.
format	Thesis
qualification_name	Doctor of Philosophy (PhD.)
qualification_level	Doctorate
author	Mas Ira Syafila, Mohd Hilmi Tan
author_facet	Mas Ira Syafila, Mohd Hilmi Tan
author_sort	Mas Ira Syafila, Mohd Hilmi Tan
title	Terahertz sensing analysis for early detection of ganoderma boninense disease using near infrared (NIR) spectrometer
title_short	Terahertz sensing analysis for early detection of ganoderma boninense disease using near infrared (NIR) spectrometer
title_full	Terahertz sensing analysis for early detection of ganoderma boninense disease using near infrared (NIR) spectrometer
title_fullStr	Terahertz sensing analysis for early detection of ganoderma boninense disease using near infrared (NIR) spectrometer
title_full_unstemmed	Terahertz sensing analysis for early detection of ganoderma boninense disease using near infrared (NIR) spectrometer
title_sort	terahertz sensing analysis for early detection of ganoderma boninense disease using near infrared (nir) spectrometer
granting_institution	Universiti Malaysia Pahang
granting_department	Faculty of Electrical and Electronic Engineering Technology
publishDate	2023
url	http://umpir.ump.edu.my/id/eprint/38493/1/ir.Terahertz%20sensing%20analysis%20for%20early%20detection%20of%20ganoderma%20boninense%20disease%20using%20near%20infrared%20%28NIR%29%20spectrometer.pdf
_version_	1783732296540487680

Terahertz sensing analysis for early detection of ganoderma boninense disease using near infrared (NIR) spectrometer

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