Ploidy detection, genetic diversity, and quantitative trait loci mapping in molly fish (poecilia spp.)
A study was conducted to construct a preliminary linkage map for molly, Poecilia and to test association between markers and QTL traits. In linkage map construction, three major steps were involved. First is the development of mapping population. Background genetic information of the parental speci...
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| Format: | Thesis |
| Language: | English |
| Published: |
2012
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| Subjects: | |
| Online Access: | http://psasir.upm.edu.my/id/eprint/31921/1/FP%202012%2014R.pdf |
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| Summary: | A study was conducted to construct a preliminary linkage map for molly, Poecilia and to test association between markers and QTL traits. In linkage map construction, three
major steps were involved. First is the development of mapping population. Background genetic information of the parental species such as occurrence of triploidy and genetic
variability were crucial before any attempt to develop a mapping population. Triploid detection was carried out in this study by using highly polymorphic microsatellite
(SSRs) primer pairs. Ten SSRs primer pairs could clearly differentiate among one, two and three alleles which could be used to infer different ploidy levels. The presence of
two alleles indicates a diploid at that particular locus and evidence of three alleles could be inferred as triploid. If such association was direct, the occurrence of triploidy in molly fish sampled in this study was extremely low and negligible. The genetic diversity among the four species of live-bearer fishes namely Xiphophorus maculatus,
Xiphophorus helleri, Poecilia reticulata and Poecilia latipinna were revealed using 15 polymorphic SSRs primer pairs. A total of 131 samples which comprised of these four
species of live-bearers were collected in the middle of October 2009 from Aquatic International, Subang Jaya, Malaysia. Results showed that the clustering pattern of both
Xiphophorus and Poecilia as revealed by these molecular markers seems to be in accordance with their taxonomy. In P. latipinna, the occurrence of inbreeding or outbreeding was absent as indicated by the level of heterozygosity. Majority of alleles were homozygous within P. latipinna and this seems to resemble the genome characteristic of a purebred fish. Purebred fish is an ideal parental material in any mapping population. A mapping population developed through backcross and testcross strategy was successfully attempted. A parallel study on the mode of inheritance of background body colour had also been initiated by evaluating body colour of progenies derived from crosses between two different colour variants of molly, [P. latipinna (non-black) and P. sphenops (black)]. Non-black body colour was found to be completely dominant over black and was not sex-linked. Multiple genes interaction which acted nonadditively was also found to be influencing this phenotypic trait. However, such interaction effect was restricted in crosses generated between genetically related fish. The second step in linkage map construction is identification of polymorphism using molecular markers. A total of 142 SSRs primer pairs which includes those that were developed for Xiphophorus maculatus (123 primer pairs) and Poecilia reticulata (19 primer pairs) were screened and 95 primer pairs were able to be amplified on the DNA
of molly, Poecilia. However, only 29 SSRs primer pairs were polymorphic when genotyped on 77 progenies derived from two backcrosses (n = 56) and a testcross (n =21). The fish samples used for the development of mapping population were collected from Aquatic International Subang Jaya, Malaysia.
The final step is linkage analysis of polymorphic markers. Among the 29 polymorphic SSRs primer pairs identified, only 18 were informative and could be used to construct the linkage map. The constructed linkage map consists of four linkage groups covering a map size of 516.1 cM. One potential QTL, dorsal fin length was successfully associated
between marker regions of Msd021, Msb069 and Msb068 on linkage group 2. The major drawback found in this study was low percentage of polymorphic SSRs primer pairs. Such condition not only greatly restricted the number of markers that could be positioned on the linkage map but also minimizes the number of linkage group that could be generated. Map enrichment effort using both amplified fragment length polymorphism (AFLP) markers and development of new SSRs primer pairs for this species are strongly suggested. |
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