An integrated RGO-pamam thin film with SPR technique for dengue virus detection

The growing demand for early detection of dengue virus (DENV) has contributed to integrated thin films with surface plasmon resonance (SPR) technique, i.e. Au/Fe-NCCCTAB/ IgM, Au/CdSQDs-RGO/IgM, Au/CdSQDs-PAMAM/IgM, and Au/DSU/RGOPAMAM/ IgM. Their sensing performances such as sensitivity, binding...

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Main Author:	Sheh Omar, Nur Alia
Format:	Thesis
Language:	English
Published:	2020
Subjects:	Dengue viruses Polymerase chain reaction - Diagnostic use Enzyme-linked immunosorbent assay
Online Access:	http://psasir.upm.edu.my/id/eprint/91079/1/ITMA%202020%2010%20IR.pdf
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spelling	my-upm-ir.910792021-10-25T03:09:54Z An integrated RGO-pamam thin film with SPR technique for dengue virus detection 2020-01 Sheh Omar, Nur Alia The growing demand for early detection of dengue virus (DENV) has contributed to integrated thin films with surface plasmon resonance (SPR) technique, i.e. Au/Fe-NCCCTAB/ IgM, Au/CdSQDs-RGO/IgM, Au/CdSQDs-PAMAM/IgM, and Au/DSU/RGOPAMAM/ IgM. Their sensing performances such as sensitivity, binding affinity, fullwidth- half-maximum (FWHM), detection accuracy (DA), and figure-of-merit (FOM) were analysed. The first developed Au/Fe-NCC-CTAB/IgM sensor film yielded the sensitivity of 27.051 °/nM, binding affinity of 0.862 TM-1, and high performances of DA and FOM on detection of 0.001 nM of DENV E-proteins. For Au/CdSQDs-RGO/IgM sensor film, the detection performance showed the sensitivity and binding affinity values of 5.496 °/nM and 0.775 TM-1, respectively. The results also showed that the sensor film had the highest DA and FOM values when detecting 0.001 nM of DENV E-proteins. The third developed Au/CdSQDs-PAMAM/IgM sensor film showed the sensitivity of 7.577 °/nM, binding affinity of 2.696 TM-1, and high performances of DA and FOM on detection of 0.001 nM of DENV E-proteins. The final development of SPR sensor integrated Au/DSU/RGOPAMAM/ IgM sensor film resulted in the sensitivity of 10.939 °/nM, binding affinity of 9.783 TM-1, and high performances of DA and FOM on detection of 0.0001 nM of DENV E-proteins. Structural investigations using Raman spectroscopy, Ultraviolet-visible near infrared (UV-Vis-NIR) spectroscopy, and Atomic force microscopy (AFM) have confirmed the presence of the conjugate DENV E-proteins-antibodies-nanocomposite layer. Most importantly, by comparing the performances of the sensor films described above, the results found that the Au/DSU/RGO-PAMAM/IgM is a very effective sensor film because it has the lowest quantitation limit and strongest binding affinity. Despite its low sensitivity, the sensitivity of detection was further enhanced by optimizing the fabrication of Au/DSU/RGO-PAMAM/IgM sensor film. The excellent sensitivity and binding affinity constant obtained were 333.896 °/nM and 9.345 TM-1, respectively. High performance of DA, FOM, selectivity, stability, reproducibility, and spike-recovery were achieved at DENV E-proteins concentration of 0.00008 nM (0.8 fM), indicating the best concentration limit obtained so far. In addition, this sensor film demonstrated a real-time DENV Eproteins detection within 8 minutes. Studies from structural measurements have successfully showed the presence of functional groups, absorption band shifts, and increased in surface roughness values from 1.56 nm to 3.19 nm due to the binding event of sensing layer to DENV E-proteins. Dengue viruses Polymerase chain reaction - Diagnostic use Enzyme-linked immunosorbent assay 2020-01 Thesis http://psasir.upm.edu.my/id/eprint/91079/ http://psasir.upm.edu.my/id/eprint/91079/1/ITMA%202020%2010%20IR.pdf text en public doctoral Universiti Putra Malaysia Dengue viruses Polymerase chain reaction - Diagnostic use Enzyme-linked immunosorbent assay Yap, Wing Fen
institution	Universiti Putra Malaysia
collection	PSAS Institutional Repository
language	English
advisor	Yap, Wing Fen
topic	Dengue viruses Polymerase chain reaction - Diagnostic use Enzyme-linked immunosorbent assay
spellingShingle	Dengue viruses Polymerase chain reaction - Diagnostic use Enzyme-linked immunosorbent assay Sheh Omar, Nur Alia An integrated RGO-pamam thin film with SPR technique for dengue virus detection
description	The growing demand for early detection of dengue virus (DENV) has contributed to integrated thin films with surface plasmon resonance (SPR) technique, i.e. Au/Fe-NCCCTAB/ IgM, Au/CdSQDs-RGO/IgM, Au/CdSQDs-PAMAM/IgM, and Au/DSU/RGOPAMAM/ IgM. Their sensing performances such as sensitivity, binding affinity, fullwidth- half-maximum (FWHM), detection accuracy (DA), and figure-of-merit (FOM) were analysed. The first developed Au/Fe-NCC-CTAB/IgM sensor film yielded the sensitivity of 27.051 °/nM, binding affinity of 0.862 TM-1, and high performances of DA and FOM on detection of 0.001 nM of DENV E-proteins. For Au/CdSQDs-RGO/IgM sensor film, the detection performance showed the sensitivity and binding affinity values of 5.496 °/nM and 0.775 TM-1, respectively. The results also showed that the sensor film had the highest DA and FOM values when detecting 0.001 nM of DENV E-proteins. The third developed Au/CdSQDs-PAMAM/IgM sensor film showed the sensitivity of 7.577 °/nM, binding affinity of 2.696 TM-1, and high performances of DA and FOM on detection of 0.001 nM of DENV E-proteins. The final development of SPR sensor integrated Au/DSU/RGOPAMAM/ IgM sensor film resulted in the sensitivity of 10.939 °/nM, binding affinity of 9.783 TM-1, and high performances of DA and FOM on detection of 0.0001 nM of DENV E-proteins. Structural investigations using Raman spectroscopy, Ultraviolet-visible near infrared (UV-Vis-NIR) spectroscopy, and Atomic force microscopy (AFM) have confirmed the presence of the conjugate DENV E-proteins-antibodies-nanocomposite layer. Most importantly, by comparing the performances of the sensor films described above, the results found that the Au/DSU/RGO-PAMAM/IgM is a very effective sensor film because it has the lowest quantitation limit and strongest binding affinity. Despite its low sensitivity, the sensitivity of detection was further enhanced by optimizing the fabrication of Au/DSU/RGO-PAMAM/IgM sensor film. The excellent sensitivity and binding affinity constant obtained were 333.896 °/nM and 9.345 TM-1, respectively. High performance of DA, FOM, selectivity, stability, reproducibility, and spike-recovery were achieved at DENV E-proteins concentration of 0.00008 nM (0.8 fM), indicating the best concentration limit obtained so far. In addition, this sensor film demonstrated a real-time DENV Eproteins detection within 8 minutes. Studies from structural measurements have successfully showed the presence of functional groups, absorption band shifts, and increased in surface roughness values from 1.56 nm to 3.19 nm due to the binding event of sensing layer to DENV E-proteins.
format	Thesis
qualification_level	Doctorate
author	Sheh Omar, Nur Alia
author_facet	Sheh Omar, Nur Alia
author_sort	Sheh Omar, Nur Alia
title	An integrated RGO-pamam thin film with SPR technique for dengue virus detection
title_short	An integrated RGO-pamam thin film with SPR technique for dengue virus detection
title_full	An integrated RGO-pamam thin film with SPR technique for dengue virus detection
title_fullStr	An integrated RGO-pamam thin film with SPR technique for dengue virus detection
title_full_unstemmed	An integrated RGO-pamam thin film with SPR technique for dengue virus detection
title_sort	integrated rgo-pamam thin film with spr technique for dengue virus detection
granting_institution	Universiti Putra Malaysia
publishDate	2020
url	http://psasir.upm.edu.my/id/eprint/91079/1/ITMA%202020%2010%20IR.pdf
_version_	1747813673140748288

An integrated RGO-pamam thin film with SPR technique for dengue virus detection

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