Dna Barcoding Of The Family Scombridae In Malaysia And Phylogeography And Population Structure Of The Indian Mackerel, Rastrelliger Kanagurta For Sustainable Fisheries

This research was conducted to develop a molecular systematic identification of the commercially important family Scombridae as well as to understand the phylogeography and phylogenetics of a member species, the Indian mackerel, Rastrelliger kanagurta for sustainable fisheries in Malaysian waters. D...

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Main Author:	Akib, Noor Adelyna Mohammed
Format:	Thesis
Language:	English
Published:	2013
Subjects:	QH1 Natural history (General - Including nature conservation geographical distribution)
Online Access:	http://eprints.usm.my/46183/1/Noor%20Adelyna%20Mohammed%20Akib24.pdf
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id	my-usm-ep.46183
record_format	uketd_dc
spelling	my-usm-ep.461832020-02-12T03:14:12Z Dna Barcoding Of The Family Scombridae In Malaysia And Phylogeography And Population Structure Of The Indian Mackerel, Rastrelliger Kanagurta For Sustainable Fisheries 2013-11 Akib, Noor Adelyna Mohammed QH1 Natural history (General - Including nature conservation, geographical distribution) This research was conducted to develop a molecular systematic identification of the commercially important family Scombridae as well as to understand the phylogeography and phylogenetics of a member species, the Indian mackerel, Rastrelliger kanagurta for sustainable fisheries in Malaysian waters. DNA barcoding based on the mitochondrial cytochrome oxidase subunit I gene, widely known as the barcoding gene successfully identified and delineated 14 species of the family Scombridae sampled in Malaysian waters. The phylogeography and population structure of the pelagic Indian mackerel, R. kanagurta was also investigated among 19 Malaysian populations and one population each from Thailand, Vietnam, Indonesia (Southeast Asian region) and an Iranian population (West Indian Ocean-WIO) using mitochondrial cytochrome b gene analysis. A parallel investigation was conducted on 11 Malaysian populations and an Iranian population based on eight newly developed microsatellite markers. In this study, the next generation sequencing platform, Ion Torrent PGMTM was used to generate a partial genome survey sequence (GSS) dataset to develop microsatellite markers from R. kanagurta genomic DNA. The data generated included a total of 399,794 sequence reads (81.29 Mbp) of which 16,209 sequence reads were successfully assembled, producing 327 contigs averaging 677 bp in length in addition to the single sequence repeats (SSR) markers. 2013-11 Thesis http://eprints.usm.my/46183/ http://eprints.usm.my/46183/1/Noor%20Adelyna%20Mohammed%20Akib24.pdf application/pdf en public phd doctoral Universiti Sains Malaysia Pusat Pengajian Sains Kajihayat
institution	Universiti Sains Malaysia
collection	USM Institutional Repository
language	English
topic	QH1 Natural history (General - Including nature conservation geographical distribution)
spellingShingle	QH1 Natural history (General - Including nature conservation geographical distribution) Akib, Noor Adelyna Mohammed Dna Barcoding Of The Family Scombridae In Malaysia And Phylogeography And Population Structure Of The Indian Mackerel, Rastrelliger Kanagurta For Sustainable Fisheries
description	This research was conducted to develop a molecular systematic identification of the commercially important family Scombridae as well as to understand the phylogeography and phylogenetics of a member species, the Indian mackerel, Rastrelliger kanagurta for sustainable fisheries in Malaysian waters. DNA barcoding based on the mitochondrial cytochrome oxidase subunit I gene, widely known as the barcoding gene successfully identified and delineated 14 species of the family Scombridae sampled in Malaysian waters. The phylogeography and population structure of the pelagic Indian mackerel, R. kanagurta was also investigated among 19 Malaysian populations and one population each from Thailand, Vietnam, Indonesia (Southeast Asian region) and an Iranian population (West Indian Ocean-WIO) using mitochondrial cytochrome b gene analysis. A parallel investigation was conducted on 11 Malaysian populations and an Iranian population based on eight newly developed microsatellite markers. In this study, the next generation sequencing platform, Ion Torrent PGMTM was used to generate a partial genome survey sequence (GSS) dataset to develop microsatellite markers from R. kanagurta genomic DNA. The data generated included a total of 399,794 sequence reads (81.29 Mbp) of which 16,209 sequence reads were successfully assembled, producing 327 contigs averaging 677 bp in length in addition to the single sequence repeats (SSR) markers.
format	Thesis
qualification_name	Doctor of Philosophy (PhD.)
qualification_level	Doctorate
author	Akib, Noor Adelyna Mohammed
author_facet	Akib, Noor Adelyna Mohammed
author_sort	Akib, Noor Adelyna Mohammed
title	Dna Barcoding Of The Family Scombridae In Malaysia And Phylogeography And Population Structure Of The Indian Mackerel, Rastrelliger Kanagurta For Sustainable Fisheries
title_short	Dna Barcoding Of The Family Scombridae In Malaysia And Phylogeography And Population Structure Of The Indian Mackerel, Rastrelliger Kanagurta For Sustainable Fisheries
title_full	Dna Barcoding Of The Family Scombridae In Malaysia And Phylogeography And Population Structure Of The Indian Mackerel, Rastrelliger Kanagurta For Sustainable Fisheries
title_fullStr	Dna Barcoding Of The Family Scombridae In Malaysia And Phylogeography And Population Structure Of The Indian Mackerel, Rastrelliger Kanagurta For Sustainable Fisheries
title_full_unstemmed	Dna Barcoding Of The Family Scombridae In Malaysia And Phylogeography And Population Structure Of The Indian Mackerel, Rastrelliger Kanagurta For Sustainable Fisheries
title_sort	dna barcoding of the family scombridae in malaysia and phylogeography and population structure of the indian mackerel, rastrelliger kanagurta for sustainable fisheries
granting_institution	Universiti Sains Malaysia
granting_department	Pusat Pengajian Sains Kajihayat
publishDate	2013
url	http://eprints.usm.my/46183/1/Noor%20Adelyna%20Mohammed%20Akib24.pdf
_version_	1747821628219195392

Dna Barcoding Of The Family Scombridae In Malaysia And Phylogeography And Population Structure Of The Indian Mackerel, Rastrelliger Kanagurta For Sustainable Fisheries

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