Pso-based data clustering for DNA computing readout, implemented on lightcycler

A Seven-Nodes Hamiltonian Path Problem (HPP) has been solved by Adleman in the first experiment of Deoxyribonucleic Acid (DNA) computation by using some biotechnology methods such as hybridization and polymerase chain reaction (PCR). Moreover, graduated PCR has been exploited to visualize the Hamilt...

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Main Author:	Maghsoudi, Mohammad Javad
Format:	Thesis
Published:	2010
Subjects:	TK Electrical engineering Electronics Nuclear engineering
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id	my-utm-ep.26947
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spelling	my-utm-ep.269472017-06-18T02:39:37Z Pso-based data clustering for DNA computing readout, implemented on lightcycler 2010 Maghsoudi, Mohammad Javad TK Electrical engineering. Electronics Nuclear engineering A Seven-Nodes Hamiltonian Path Problem (HPP) has been solved by Adleman in the first experiment of Deoxyribonucleic Acid (DNA) computation by using some biotechnology methods such as hybridization and polymerase chain reaction (PCR). Moreover, graduated PCR has been exploited to visualize the Hamiltonian path in that experiment. In this research, we have applied particle swarm optimization (PSO) for automation of DNA computing readout method based on real-time Polymerase Chain Reaction (PCR). Moreover, the aim of this automation is identifying two different reactions in real-time PCR which uses an approach that is combination of in vitro and in silico in order to inspect the placement of pairs of nodes in the Hamiltonian Path Problem (HPP). In addition, the real-time PCR experiment is implemented on LightCycler system and software by MATLAB is built to implement the PSO clustering. 2010 Thesis http://eprints.utm.my/id/eprint/26947/ http://dms.library.utm.my:8080/vital/access/manager/Repository/vital:78072?queryType=vitalDismax&query=Pso-based+data+clustering+for+DNA+computing+readout%2C+implemented+on+lightcycler masters Universiti Teknologi Malaysia, Faculty of Electrical Engineering, Faculty of Electrical Engineering Faculty of Electrical Engineering
institution	Universiti Teknologi Malaysia
collection	UTM Institutional Repository
topic	TK Electrical engineering Electronics Nuclear engineering
spellingShingle	TK Electrical engineering Electronics Nuclear engineering Maghsoudi, Mohammad Javad Pso-based data clustering for DNA computing readout, implemented on lightcycler
description	A Seven-Nodes Hamiltonian Path Problem (HPP) has been solved by Adleman in the first experiment of Deoxyribonucleic Acid (DNA) computation by using some biotechnology methods such as hybridization and polymerase chain reaction (PCR). Moreover, graduated PCR has been exploited to visualize the Hamiltonian path in that experiment. In this research, we have applied particle swarm optimization (PSO) for automation of DNA computing readout method based on real-time Polymerase Chain Reaction (PCR). Moreover, the aim of this automation is identifying two different reactions in real-time PCR which uses an approach that is combination of in vitro and in silico in order to inspect the placement of pairs of nodes in the Hamiltonian Path Problem (HPP). In addition, the real-time PCR experiment is implemented on LightCycler system and software by MATLAB is built to implement the PSO clustering.
format	Thesis
qualification_level	Master's degree
author	Maghsoudi, Mohammad Javad
author_facet	Maghsoudi, Mohammad Javad
author_sort	Maghsoudi, Mohammad Javad
title	Pso-based data clustering for DNA computing readout, implemented on lightcycler
title_short	Pso-based data clustering for DNA computing readout, implemented on lightcycler
title_full	Pso-based data clustering for DNA computing readout, implemented on lightcycler
title_fullStr	Pso-based data clustering for DNA computing readout, implemented on lightcycler
title_full_unstemmed	Pso-based data clustering for DNA computing readout, implemented on lightcycler
title_sort	pso-based data clustering for dna computing readout, implemented on lightcycler
granting_institution	Universiti Teknologi Malaysia, Faculty of Electrical Engineering, Faculty of Electrical Engineering
granting_department	Faculty of Electrical Engineering
publishDate	2010
_version_	1747815549769875456

Pso-based data clustering for DNA computing readout, implemented on lightcycler

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